I usually import most projects through the Eclipse maven plugin, and then I can check out/in files through the Perforce plugin.
Before I build in Eclipse I usually run mvn clean install -Dmaven.test.skip=true, after I've gotten the latest changes from the depot.
The most recent time I did an mvn eclipse:eclipse -DdownloadSources=true build that reset my Eclipse project explorer view and one project I used started to show all the imported JAR files in the root directory making it bit cumbersome to use.
I was helped by a colleague to customize my view with the downward caret looking symbol to the right of the project explorer view.
Here are some screenshots:
After selecting the Customize View, scroll down to Libraries from Extenal and select the associated checkbox, then save.
This should resolve all the JARs showing in your root directory.
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